FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane3_Index5_1.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 20844275 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 4349025 | 2.5983768 | 5.3248425 | 1 |
| CCTGG | 4371495 | 2.5948439 | 6.150834 | 1 |
| GAAGA | 4503295 | 2.5738888 | 5.0553045 | 2 |
| CTTCT | 4574950 | 2.5442698 | 5.5357747 | 1 |
| CTGGA | 4244190 | 2.4640565 | 8.583149 | 1 |
| TCCAG | 4124640 | 2.3853054 | 5.442228 | 2 |
| CTCCT | 4048410 | 2.3169441 | 7.018114 | 1 |
| CTGGG | 3840540 | 2.2886083 | 8.319871 | 1 |
| CAGGA | 3832620 | 2.2396522 | 5.410858 | 1 |
| CTTCA | 3938545 | 2.2046592 | 5.645288 | 1 |
| CCCAG | 3691840 | 2.197127 | 6.9688954 | 1 |
| CTCCA | 3807210 | 2.1931424 | 7.406825 | 1 |
| CTCTG | 3600640 | 2.0687532 | 6.301774 | 1 |
| CTGGC | 3172635 | 1.8832213 | 5.155199 | 1 |
| CTGAA | 3311030 | 1.8728185 | 5.5289254 | 1 |
| TGGAA | 3290095 | 1.8682667 | 5.0971932 | 2 |
| CTCAG | 3050970 | 1.7643952 | 5.917019 | 1 |
| CTTTG | 3075105 | 1.7168591 | 5.04423 | 1 |
| CTTGG | 2833215 | 1.6342049 | 5.271967 | 1 |